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AT5G12210.1 RAB geranylgeranyl transferase beta subunit 1

Lab Annot.

geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative
Mapman: 16.1.1 secondary metabolism.isoprenoids.non-mevalonate pathway

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G12210.2 11 Arabidopsis thaliana 0 321 99 99 3 (3) _
AT3G12070.1 11 Arabidopsis thaliana 0 314 87 93 0 (0) _
AT3G12070.2 11 Arabidopsis thaliana 0 314 87 93 0 (0) _
Os08g40140.1 7 Oryza sativa 0 312 77 88 0 (0) _
Os08g40140.2 7 Oryza sativa 3E-166 283 77 88 0 (0) _
Os11g32090.1 7 Oryza sativa 4E-32 141 46 58 0 (0) M
GRMZM2G124557_P02 3.21 Zea mays 0 313 75 88 3 (3) _
v1_GRMZM2G124557_P02 4a53 Zea mays 0 313 75 88 0 (0) _
Zm00001eb035310_P004 agpv5 Zea mays 0 313 75 88 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Prenyltrans(6) SQHop_cyclase_C(4) SQHop_cyclase_N(4) TED_complement(3)
TargetP:	Cytoplasm (Class 4 C0.145; M0.162; S0.273; _0.582)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	321 aa (-cTP 298)
Molecular Weight	35.50 kDA(-cTP )
PI	5.35(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
2300	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

15815986(Leaf)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data