PPDB

The Plant Proteome Database

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AT5G12190.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot. RNA recognition motif (RRM)-containing protein
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G14870.1 11Arabidopsis thaliana3E-367075870 (0)_
AT4G02430.1 11Arabidopsis thaliana1E-087237550 (0)_
AT1G02840.1 11Arabidopsis thaliana2E-087236554 (4)_
Os03g59710.1 7Oryza sativa2E-73122849017 (17)M
Os03g58720.1 7Oryza sativa8E-099339543 (3)_
Os07g47630.2 7Oryza sativa4E-089633508 (8)M
GRMZM2G107745_P01 3.21Zea mays1E-71122828818 (16)M
v1_GRMZM2G107745_P01 4a53Zea mays1E-71122828817 (17)M
Zm00001eb062150_P001 agpv5Zea mays1E-7112282880 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RRM_1(2) RRM_5(1) RRM_7(1) RRM_8(1)
TargetP: Mitochondria (Class 4 C0.041; M0.698; S0.058; _0.429)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 124 aa (-cTP 121)
Molecular Weight 14.38 kDA(-cTP )
PI 9.36(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2306Detail        [A. thaliana] Clp C1 TRAP
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help