PPDB

PPDB	The Plant Proteome Database

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AT5G12010.1 nuclease

Lab Annot.

phospholipase-like
Mapman: 11.9.2 lipid metabolism.lipid degradation.lipases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G29780.1 11 Arabidopsis thaliana 0 459 58 75 0 (0) _
AT3G55350.1 11 Arabidopsis thaliana 1E-42 323 29 51 0 (0) _
AT3G63270.1 11 Arabidopsis thaliana 5E-40 292 30 53 0 (0) _
Os01g40070.1 7 Oryza sativa 0 466 61 75 0 (0) _
Os05g51520.1 7 Oryza sativa 0 356 69 81 0 (0) _
Os01g09220.1 7 Oryza sativa 3E-164 353 64 78 0 (0) _
GRMZM2G037015_P01 3.21 Zea mays 0 475 60 75 0 (0) _
v1_GRMZM2G037015_P01 4a53 Zea mays 0 475 60 75 3 (3) _
GRMZM2G129291_P01 3.21 Zea mays 0 360 70 82 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CDC45(1) DDE_Tnp_4(1) DUF2385(1) Plant_tran(2) T4SS_CagC(1) VHP(1)
TargetP:	Cytoplasm (Class 1 C0.100; M0.075; S0.091; _0.930)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	502 aa (-cTP 500)
Molecular Weight	56.81 kDA(-cTP )
PI	5.68(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
102	Detail								petal [B. oleracea]	plastid stroma	Alboglabra
655	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3
755	Detail								[A. thaliana]
888	Detail								[A. thaliana]		R4Strep
1175	Detail								leaf [A. thaliana]	co-IP RH3 stroma	wild-type
1176	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	wild-type
1177	Detail								leaf [A. thaliana]	co-IP OEC23 stroma	wild-type
1197	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1208	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1291	Detail								leaf [A. thaliana]	co-IP preserum cGEP (rep. 1) stroma	wild-type
1294	Detail								leaf [A. thaliana]	co-IP cGEP (rep. 2) stroma	wild-type
1351	Detail								leaf [A. thaliana]	total tissue	t1-t2
1384	Detail								[A. thaliana]	chloroplast fractionation
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1397	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1459	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 2)
1465	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 1)
1467	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 2)
1468	Detail								leaf [A. thaliana]	co-IP GST stroma	clpc1 x clps (rep. 2)
1470	Detail								leaf [A. thaliana]	co-IP GST stroma	clpc1 x clps (rep. 3)
1481	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1495	Detail								leaf [A. thaliana]		wild-type
1496	Detail								leaf [A. thaliana]		Prep1_Prep2_t1_t2
1507	Detail								[A. thaliana]		wild-type
1516	Detail								leaf [A. thaliana]		wild-type
1540	Detail								leaf [A. thaliana]	Thylakoids plastoglobule	wild-type
1587	Detail								[A. thaliana]
1934	Detail								leaf [A. thaliana]	chloroplast	wild-type
1937	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
2243	Detail								seedlings [A. thaliana]	total tissue	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

15060130(Plasma Membrane proteome)
17151019(vacuole - suspension cell)
17432890(leaf total membranes)
17660356(tonoplast (Brassica oleracea buds))
18431481(chloroplast)
20706207(contaminants cell cycle interactome (cell culture))

Comparative Proteomics Data