PPDB

The Plant Proteome Database

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AT5G11980.1   conserved oligomeric Golgi complex component-related / COG complex component-like protein

Lab Annot. conserved oligomeric Golgi complex component-related / COG complex component-related
Mapman: 3.5 minor CHO metabolism.others
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G11980.2 11Arabidopsis thaliana047699990 (0)_
Os12g35290.1 7Oryza sativa055268821 (1)_
v1_AC235544.1_FGP004 4a53Zea mays055168830 (0)_
Zm00001eb401360_P003 agpv5Zea mays041568830 (0)_
v1_GRMZM2G091180_P02 4a53Zea mays041568830 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Dor1(1) Exo84_C(1) Vps51(3) Vps54_N(1)
TargetP: Cytoplasm (Class 3 C0.148; M0.069; S0.127; _0.577)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 569 aa (-cTP 549)
Molecular Weight 63.05 kDA(-cTP )
PI 5.06(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2296Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21533090(plasmodesmata-crude)
21173025(root proteome)

Comparative Proteomics Data


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