PPDB

 The Plant Proteome Database

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AT5G11840.1   YCF36%2C putative (DUF1230)
Lab Annot. homolog of CGLD27 (DUF1230)
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G11840.3 11Arabidopsis thaliana2E-1391921001000 (0)C
AT5G11840.4 11Arabidopsis thaliana1E-1381911001000 (0)C
AT5G11840.2 11Arabidopsis thaliana3E-12517598990 (0)C
Os05g46250.1 7Oryza sativa2E-8420565740 (0)C
Os05g46250.2 7Oryza sativa1E-4811471790 (0)C
Os05g46250.3 7Oryza sativa3E-3910368770 (0)C
GRMZM2G087081_P02 3.21Zea mays7E-7820665731 (1)C
Zm00001eb342330_P002 agpv5Zea mays7E-7820665730 (0)C
Zm00001eb342330_P001 agpv5Zea mays7E-7820665730 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF1230(1)
TargetP: Chloroplast (Class 1 C0.936; M0.106; S0.030; _0.042)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 3 TMs
Aramemnon: 3 TMs
TAT position:
Length 265 aa (-cTP 223)
Molecular Weight 29.31 kDA(-cTP 24.64)
PI 6.11(-cTP 4.66)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help