PPDB

The Plant Proteome Database

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AT5G11580.1   Regulator of chromosome condensation (RCC1) family protein

Lab Annot. UVB-resistance protein-related / regulator of chromosome condensation (RCC1) protein
Mapman: 31.2 cell.division
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G11580.2 11Arabidopsis thaliana04021001000 (0)_
AT5G63860.1 11Arabidopsis thaliana2E-354702842122 (48)_
AT5G16040.1 11Arabidopsis thaliana2E-2741428420 (0)_
Os01g52630.1 7Oryza sativa055950670 (0)_
Os02g34860.1 7Oryza sativa2E-3342627450 (0)_
Os04g35570.2 7Oryza sativa5E-3342528445 (5)_
v1_GRMZM2G311003_P01 4a53Zea mays055350680 (0)_
GRMZM2G311003_P01 3.21Zea mays055350680 (0)_
v1_GRMZM2G311003_P02 4a53Zea mays9E-13941549670 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RCC1(8) RCC1_2(7)
TargetP: Cytoplasm (Class 3 C0.061; M0.078; S0.291; _0.748)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 553 aa (-cTP 487)
Molecular Weight 60.54 kDA(-cTP )
PI 5.08(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1207Detail       leaf [A. thaliana] total leaf tissue clpp3 null
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help