PPDB

The Plant Proteome Database

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AT5G10490.1   MSCS-like 2

Lab Annot. Mechanosensitive ion channel MSL2
Mapman: 31.5.3* cell.plastid.division
Curated Location envelope (Pubmed: 23198870 16401419 18431481 )

TAIR curated location: plastid envelope16401419
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G10490.3 11Arabidopsis thaliana06651001002 (2)C
AT5G10490.2 11Arabidopsis thaliana06451001002 (2)M
AT1G58200.1 11Arabidopsis thaliana067154660 (0)_
Os03g31839.1 7Oryza sativa2E-13740557710 (0)S
Os04g48940.1 7Oryza sativa1E-1020625450 (0)C
Os04g48940.2 7Oryza sativa1E-1020625450 (0)C
GRMZM2G028914_P01 3.21Zea mays0586546817 (17)C
GRMZM2G028914_P02 3.21Zea mays0586546817 (17)C
Zm00001eb020860_P002 agpv5Zea mays058654680 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cyclin_C(2) MS_channel(1)
TargetP: Chloroplast (Class 3 C0.862; M0.342; S0.002; _0.015)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 5 TMs
Aramemnon: 2 TMs
TAT position:
Length 673 aa (-cTP 598)
Molecular Weight 74.43 kDA(-cTP 66.03)
PI 9.57(-cTP 9.40)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help