PPDB

The Plant Proteome Database

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AT5G09995.2   transmembrane protein

Lab Annot. unkown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G09995.3 11Arabidopsis thaliana025799992 (1)C
AT5G09995.1 11Arabidopsis thaliana3E-1411961001002 (1)C
AT1G08530.1 11Arabidopsis thaliana3E-2825333533 (0)C
Os06g12129.1 7Oryza sativa3E-2315037590 (0)C
Os12g24240.1 7Oryza sativa6E-198252650 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF948(1)
TargetP: Chloroplast (Class 3 C0.707; M0.098; S0.010; _0.143)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 257 aa (-cTP 202)
Molecular Weight 28.58 kDA(-cTP 22.40)
PI 10.20(-cTP 9.67)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1

* For details about the exprimental sources click here.

Published Proteomics Data

19995728(proplastid (Brassica napus))
20061580(chloroplast envelope (inner+outer))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help