PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G09820.2   Plastid-lipid associated protein PAP / fibrillin family protein
Lab Annot. fibrillin 5 (FBN5) (not PG)
Mapman: 26.31* misc.fibrillins
Curated Location thylakoid-peripheral-stromal-side (Pubmed: 23198870 18431481 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G09820.1 11Arabidopsis thaliana024910010028 (24)C
AT5G09820.3 11Arabidopsis thaliana5E-1502081001000 (0)C
AT3G26070.1 11Arabidopsis thaliana1E-091862748278 (250)C
Os04g34460.1 7Oryza sativa2E-8623054720 (0)C
Os09g04790.1 7Oryza sativa9E-13223274243 (43)C
Os04g46610.2 7Oryza sativa3E-0819327454 (4)C
Zm00001eb083210_P003 agpv5Zea mays6E-8419361780 (0)_
Zm00001eb083210_P004 agpv5Zea mays2E-8321058730 (0)C
v1_GRMZM2G124473_P01 4a53Zea mays2E-83210587317 (17)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PAP_fibrillin(2) Tox-ART-HYD1(2)
TargetP: Chloroplast (Class 2 C0.944; M0.224; S0.010; _0.026)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 273 aa (-cTP 212)
Molecular Weight 30.53 kDA(-cTP 23.92)
PI 5.67(-cTP 4.94)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
180_181Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
303Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
870Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1458Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 1)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2112Detail       leaf [A. thaliana] Stroma stromawt
2114Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help