PPDB

 The Plant Proteome Database

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AT5G08740.1   NAD(P)H dehydrogenase C1
Lab Annot. NDC1 - dually targeted in plastid & mitochondria
Mapman: 18.5 Co-factor and vitamine metabolism.folate & vitamine K; 21 redox
Curated Location mitochondria (Pubmed: 23198870 18703057 16461379 16414959 22274653 18431481 )
plastoglobules (Pubmed: 23198870 18703057 16461379 16414959 22274653 18431481 )

TAIR curated location: intrinsic to mitochondrial inner membrane16258072
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G29990.1 11Arabidopsis thaliana2E-2146125435 (5)M
AT1G07180.1 11Arabidopsis thaliana2E-2050825420 (0)M
AT5G22140.1 11Arabidopsis thaliana9E-1133726420 (0)_
Os06g11140.1 7Oryza sativa0470657917 (17)C
Os07g37730.1 7Oryza sativa4E-1546125410 (0)M
Os01g61410.1 7Oryza sativa1E-1445823410 (0)M
GRMZM2G080044_P01 3.21Zea mays0470647747 (19)C
v1_GRMZM2G080044_P01 4a53Zea mays0470647721 (21)C
Zm00001eb373110_P004 agpv5Zea mays046165780 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AlaDh_PNT_C(2) DAO(3) Lycopene_cycl(2) NAD_binding_8(2) NAD_binding_9(3) Pyr_red
TargetP: Chloroplast (Class 2 C0.933; M0.142; S0.013; _0.008)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 519 aa (-cTP 467)
Molecular Weight 57.02 kDA(-cTP 51.38)
PI 6.52(-cTP 5.46)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
218Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
219Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
220Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
221Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
224Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
225Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
226Detail       leaf [A. thaliana] chloroplast plastoglobuleclpr2-1
235Detail       leaf [A. thaliana] plastid plastoglobulewild-type
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
484Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
666Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 1-1)
667Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2-1)
668Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3-1)
669Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 1-1)
670Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 2-1)
671Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 3-1)
681Detail       leaf [A. thaliana] chloroplast plastoglobulek3 (rep. 1-1)
686Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 1-2)
687Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 2-2)
688Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 3-2)
689Detail       leaf [A. thaliana] chloroplast plastoglobulek3 (rep. 1-2)
692Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 1-2)
693Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2-2)
694Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3-2)
771Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 1 - 5ug)
773Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2 - 5 ug)
774Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2- 10 ug)
775Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3 - 5 ug)
776Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3 - 10 ug)
872Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (1-8); k2k3 (9-10)
875Detail       leaf [A. thaliana] chloroplast stromawild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1122Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1123Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1124Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1331Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1332Detail       leaf [A. thaliana] chloroplast thylakoid membraneshoot1
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1372Detail       Total leaf 5d ML stress [A. thaliana] chloroplast plastoglobulewild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1513Detail       leaf [A. thaliana] wild-type
1514Detail       leaf [A. thaliana] wild-type
1515Detail       leaf [A. thaliana] wild-type
1516Detail       leaf [A. thaliana] wild-type
1517Detail       leaf [A. thaliana] wild-type
1518Detail       leaf [A. thaliana] wild-type
1519Detail       leaf [A. thaliana] wild-type
1520Detail       leaf [A. thaliana] wild-type
1521Detail       leaf [A. thaliana] wild-type
1522Detail       leaf [A. thaliana] wild-type
1523Detail       leaf [A. thaliana] wild-type
1524Detail       leaf [A. thaliana] wild-type
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1542Detail       leaf [A. thaliana] wild-type
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1574Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1583Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1617Detail        [A. thaliana] m48
1618Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1625Detail       Rosettes [A. thaliana] Wild-type
1627Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopeWild-type
1628Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopek1xk3
1650Detail       leaf [A. thaliana] plastoglobules plastoglobulem48
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
1675Detail       Rosettes [A. thaliana]  
1676Detail       Rosettes [A. thaliana]  
1699Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
1724Detail        [A. thaliana]  
1744Detail        [A. thaliana] Mep-6
1745Detail        [A. thaliana] Col-0
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1831Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Normal light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1833Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1983Detail       leaf [A. thaliana] plastid wild-type
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2004Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2028Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2029Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2297Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 16414959(plastoglubular)
16461379(plastoglubular)
15593128(Cell Wall proteome)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21311031(chloroplasts)

Comparative Proteomics Data

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