PPDB

PPDB	The Plant Proteome Database

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AT5G08580.1 Calcium-binding EF hand family protein

Lab Annot.

calcium-binding proteins
Mapman: 30.3 signalling.calcium

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G08580.2 11 Arabidopsis thaliana 0 391 100 100 0 (0) S
AT4G27790.1 11 Arabidopsis thaliana 1E-56 392 31 50 0 (0) S
AT4G27790.2 11 Arabidopsis thaliana 2E-43 351 29 48 0 (0) S
Os02g12880.4 7 Oryza sativa 6E-117 354 51 68 0 (0) S
Os01g39134.1 7 Oryza sativa 4E-105 408 43 63 0 (0) M
Os02g12880.2 7 Oryza sativa 2E-90 365 43 60 0 (0) S
Zm00001eb240010_P004 agpv5 Zea mays 2E-123 342 53 70 0 (0) S
Zm00001eb240010_P003 agpv5 Zea mays 2E-123 342 53 70 0 (0) S
v1_GRMZM2G066614_P02 4a53 Zea mays 3E-123 342 53 70 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	EF-hand_1(6) EF-hand_5(5) EF-hand_6(6) EF-hand_7(3) EF-hand_8(5) SPARC_Ca_bdg(3)
TargetP:	Secreted (Class 3 C0.063; M0.043; S0.631; _0.154)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	391 aa (-cTP 326)
Molecular Weight	45.84 kDA(-cTP )
PI	4.91(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
94	Detail								root [B. rapa]	plastid stroma
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
19546170(mature pollen grains)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)
22430844(Golgi-cell-culture)

Comparative Proteomics Data