PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G08330.1   TCP family transcription factor

Lab Annot. TCP transcription factor
Mapman: 17.2.3 hormone metabolism.auxin.induced-regulated-responsive-activated
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G23280.1 11Arabidopsis thaliana7E-8724762670 (0)_
AT1G72010.1 11Arabidopsis thaliana9E-378080910 (0)C
AT3G47620.1 11Arabidopsis thaliana5E-369070840 (0)_
Os04g44440.1 7Oryza sativa1E-3621444510 (0)M
Os12g07480.1 7Oryza sativa3E-367780920 (0)_
Os02g42380.1 7Oryza sativa2E-346390980 (0)M
v1_GRMZM2G445944_P01 4a53Zea mays1E-5123453580 (0)C
Zm00001eb259370_P001 agpv5Zea mays1E-5123453580 (0)C
GRMZM2G445944_P01 3.21Zea mays1E-5123453580 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: TCP(1)
TargetP: Cytoplasm (Class 3 C0.405; M0.035; S0.011; _0.894)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 239 aa (-cTP 188)
Molecular Weight 24.75 kDA(-cTP )
PI 9.57(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help