PPDB

 The Plant Proteome Database

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AT5G08290.1   mRNA splicing factor%2C thioredoxin-like U5 snRNP
Lab Annot. YLS8 (yellow-leaf-specific gene 8)- dually targeted to cytosol & nucleus
Mapman: 35.1 not assigned.no ontology
Curated Location cytosol (Pubmed: 15610358 )
nucleus (Pubmed: 15610358 )

TAIR curated location: nucleus & cytoplasm15610358
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G08290.2 11Arabidopsis thaliana2E-711021001000 (0)S
AT3G24730.1 11Arabidopsis thaliana3E-2413737560 (0)_
Os10g34520.1 7Oryza sativa6E-104142971005 (5)_
Os07g10256.1 7Oryza sativa1E-103142971000 (0)C
Os11g19220.1 7Oryza sativa2E-2113634580 (0)_
GRMZM2G108277_P01 3.21Zea mays6E-104142971009 (8)_
Zm00001eb042390_P001 agpv5Zea mays6E-104142971000 (0)_
v1_GRMZM2G108277_P01 4a53Zea mays6E-104142971004 (4)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DIM1(1) Thioredoxin(1) Thioredoxin_7(1) Thioredoxin_8(1)
TargetP: Cytoplasm (Class 3 C0.049; M0.101; S0.300; _0.768)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 142 aa (-cTP 113)
Molecular Weight 16.59 kDA(-cTP )
PI 5.14(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
2286Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help