PPDB

PPDB	The Plant Proteome Database

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AT5G07410.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.8.1 cell wall.pectin*esterases.PME

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G69940.1 11 Arabidopsis thaliana 0 361 96 98 0 (0) S
AT5G61680.1 11 Arabidopsis thaliana 0 364 75 85 1 (1) S
AT5G07420.1 11 Arabidopsis thaliana 6E-179 354 66 81 0 (0) S
Os05g44600.1 7 Oryza sativa 4E-81 344 38 57 0 (0) S
Os01g53990.1 7 Oryza sativa 2E-79 342 37 58 0 (0) S
Os12g37660.1 7 Oryza sativa 1E-77 322 42 59 0 (0) C
Zm00001eb153600_P002 agpv5 Zea mays 5E-82 329 39 59 0 (0) M
v1_GRMZM2G382557_P01 4a53 Zea mays 2E-80 324 41 60 1 (1) S
GRMZM2G382557_P01 3.21 Zea mays 2E-80 324 41 60 1 (1) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1565(1) DUF4615(1) Glyco_trans_1_3(1) Pectate_lyase_3(1) Pectinesterase(1)
TargetP:	Secreted (Class 2 C0.018; M0.033; S0.866; _0.140)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	361 aa (-cTP 343)
Molecular Weight	39.34 kDA(-cTP )
PI	8.70(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

18436743(specific to flower)
19546170(mature pollen grains)

Comparative Proteomics Data