PPDB

The Plant Proteome Database

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AT5G07190.1   embryo-specific protein 3

Lab Annot. seed gene 3 (AtSG3) (PG-coexpression network)
Mapman: 33.99 development.unspecified
Curated Location oil bodies (Pubmed: 21751352 )

TAIR curated location: anchored to membrane12068095,12805588
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G07190.2 11Arabidopsis thaliana2E-13618510010011 (6)_
AT5G62210.1 11Arabidopsis thaliana4E-4912759780 (0)S
AT5G62200.1 11Arabidopsis thaliana5E-371334666120 (46)S
Os05g07890.1 7Oryza sativa2E-2312142554 (4)S
Os01g07780.1 7Oryza sativa2E-2112239540 (0)C
Zm00001eb336790_P001 agpv5Zea mays1E-1813236530 (0)S
GRMZM2G061932_P01 3.21Zea mays1E-18132365313 (7)S
v1_GRMZM2G061932_P01 4a53Zea mays1E-18132365312 (12)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ATS3(1) PLAT(1) SMN(1)
TargetP: Secreted (Class 1 C0.001; M0.042; S0.990; _0.044)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon:
TAT position:
Length 213 aa (-cTP 175)
Molecular Weight 23.08 kDA(-cTP )
PI 6.27(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
2246Detail       seedlings [A. thaliana] total tissue gfs9
2252Detail       seedlings [A. thaliana] total tissue gfs9
2291Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17432890(leaf total membranes)
18436743(specific to seeds)
19334764(plasma membrane (cell culture))
WallDB-E.Jamet(cell wall reference proteome)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help