PPDB

PPDB	The Plant Proteome Database

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AT5G06860.1 polygalacturonase inhibiting protein 1

Lab Annot.

PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

TAIR curated location: cell wall (sensu Magnoliophyta)16287169

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G06870.1 11 Arabidopsis thaliana 3E-170 330 76 86 40 (30) S
AT3G12145.1 11 Arabidopsis thaliana 1E-114 321 54 69 50 (23) S
AT3G12610.1 11 Arabidopsis thaliana 1E-48 344 36 50 0 (0) S
Os05g01444.1 7 Oryza sativa 1E-86 316 46 62 0 (0) M
Os05g01430.1 7 Oryza sativa 3E-85 312 45 62 0 (0) S
Os05g01380.1 7 Oryza sativa 1E-77 311 42 57 0 (0) S
GRMZM2G088531_P01 3.21 Zea mays 3E-99 331 45 61 0 (0) S
v1_GRMZM2G088531_P01 4a53 Zea mays 3E-99 331 45 61 0 (0) S
GRMZM2G025105_P01 3.21 Zea mays 5E-94 315 47 63 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Conotoxin(1) FNIP(3) LRR_1(7) LRR_4(5) LRR_6(7) LRR_8(5) LRRNT_2(1)
TargetP:	Secreted (Class 2 C0.017; M0.009; S0.964; _0.177)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	330 aa (-cTP 305)
Molecular Weight	36.69 kDA(-cTP )
PI	8.24(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
2400	Detail								leaf-soluble [A. thaliana]	GFP-nano-trap	wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

14595688(Cell Wall proteome)
18324730(apoplast leaf)
18998720(SA-induced secreted proteome (cell culture))
18796151(cell wall (hypocotyl))
18716313(secreted proteins (cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19714877(interactomes 14-3-3 complexes (cell culture))
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
22430844(Golgi-cell-culture)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data