PPDB

The Plant Proteome Database

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AT5G06860.1   polygalacturonase inhibiting protein 1

Lab Annot. PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
TAIR curated location: cell wall (sensu Magnoliophyta)16287169
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G06870.1 11Arabidopsis thaliana3E-170330768639 (30)S
AT3G12145.1 11Arabidopsis thaliana1E-114321546946 (23)S
AT3G12610.1 11Arabidopsis thaliana1E-4834436500 (0)S
Os05g01444.1 7Oryza sativa1E-8631646620 (0)M
Os05g01430.1 7Oryza sativa3E-8531245620 (0)S
Os05g01380.1 7Oryza sativa1E-7731142570 (0)S
GRMZM2G088531_P01 3.21Zea mays3E-9933145610 (0)S
v1_GRMZM2G088531_P01 4a53Zea mays3E-9933145610 (0)S
GRMZM2G025105_P01 3.21Zea mays5E-9431547630 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Conotoxin(1) FNIP(3) LRR_1(7) LRR_4(5) LRR_6(7) LRR_8(5) LRRNT_2(1)
TargetP: Secreted (Class 2 C0.017; M0.009; S0.964; _0.177)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 330 aa (-cTP 305)
Molecular Weight 36.69 kDA(-cTP )
PI 8.24(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

14595688(Cell Wall proteome)
18324730(apoplast leaf)
18998720(SA-induced secreted proteome (cell culture))
18796151(cell wall (hypocotyl))
18716313(secreted proteins (cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19714877(interactomes 14-3-3 complexes (cell culture))
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
22430844(Golgi-cell-culture)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help