PPDB

 The Plant Proteome Database

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AT5G06680.1   spindle pole body component 98
Lab Annot. SPC98 (SPINDLE POLE BODY COMPONENT 98)
Mapman: 31.1 cell.organisation
Curated Location
TAIR curated location: nuclear envelope & internal side of plasma membrane12006626
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G17410.2 11Arabidopsis thaliana2E-3557226451 (1)C
AT5G17410.1 11Arabidopsis thaliana3E-3557226451 (1)_
AT3G53760.1 11Arabidopsis thaliana4E-2547124392 (2)_
Os09g27370.1 7Oryza sativa085463762 (2)_
Os09g27370.2 7Oryza sativa085463762 (2)_
Os04g42330.2 7Oryza sativa2E-32572264211 (11)_
GRMZM2G096092_P01 3.21Zea mays084464777 (1)_
Zm00001eb314430_P001 agpv5Zea mays084464770 (0)_
v1_GRMZM2G096092_P01 4a53Zea mays084464771 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: GCP_C_terminal(1) GCP_N_terminal(2)
TargetP: Cytoplasm (Class 3 C0.314; M0.040; S0.022; _0.782)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 838 aa (-cTP 779)
Molecular Weight 94.65 kDA(-cTP )
PI 6.51(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
20706207(cell cycle interactome (cell culture))
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help