PPDB

The Plant Proteome Database

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AT5G06660.1   transmembrane/coiled-coil protein (Protein of unknown function DUF106%2C transmembrane)

Lab Annot. unknown protein DUF841 domain
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G12030.1 11Arabidopsis thaliana7E-11719695971 (1)S
Os03g51160.2 7Oryza sativa6E-71212587516 (16)_
Os03g51160.1 7Oryza sativa6E-71212587516 (16)_
Zm00001eb215980_P001 agpv5Zea mays3E-8120462790 (0)S
v1_GRMZM2G045690_P02 4a53Zea mays3E-81204627914 (14)S
v1_GRMZM2G045690_P01 4a53Zea mays3E-81204627914 (14)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AIF_C(1) EMC3_TMCO1(1) FemAB(1) Folate_carrier(1)
TargetP: Secreted (Class 2 C0.023; M0.016; S0.776; _0.137)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 1 TMs
TAT position:
Length 196 aa (-cTP 112)
Molecular Weight 21.42 kDA(-cTP )
PI 9.83(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19376835(leaf phosphoproteins)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help