PPDB

PPDB	The Plant Proteome Database

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AT5G06600.3 ubiquitin-specific protease 12

Lab Annot.

ubiquitin-specific protease 12 (UBP12)
Mapman: 29.5.11.5 protein.degradation.ubiquitin.ubiquitin protease

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G06600.1 11 Arabidopsis thaliana 0 983 99 100 170 (77) _
AT5G06600.2 11 Arabidopsis thaliana 0 983 99 99 170 (77) _
AT3G11910.1 11 Arabidopsis thaliana 0 984 91 95 117 (60) _
Os12g30540.1 7 Oryza sativa 0 993 82 90 28 (28) _
Os07g06950.1 7 Oryza sativa 0 887 77 87 4 (4) M
Os11g36470.1 7 Oryza sativa 0 806 84 91 9 (9) _
Zm00001eb132880_P003 agpv5 Zea mays 0 989 82 91 0 (0) _
GRMZM2G014805_P01 3.21 Zea mays 0 990 82 91 45 (36) _
Zm00001eb132880_P002 agpv5 Zea mays 0 990 82 91 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Malt_amylase_C(1) MATH(2) Nitroreductase(1) PB1(3) RA(3) SASP(1) ubiquitin(3) UC
TargetP:	Cytoplasm (Class 2 C0.150; M0.080; S0.213; _0.847)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	985 aa (-cTP 964)
Molecular Weight	115.15 kDA(-cTP )
PI	5.45(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1207	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1208	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1393	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
2003	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9
2268	Detail								seedlings [A. thaliana]	total tissue	wild-type
2270	Detail								seedlings [A. thaliana]	total tissue	wild-type
2290	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2400	Detail								leaf-soluble [A. thaliana]	GFP-nano-trap	wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
19888209(leaves)
19114538(guard cells Arabidopsis leaf)
19292762(Ubiquitin-affinity seedling (10 d))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data