PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G06390.1   FASCICLIN-like arabinogalactan protein 17 precursor

Lab Annot. FASCICLIN-like arabinogalactan protein 17 precursor
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G11700.1 11Arabidopsis thaliana0465818718 (14)S
AT2G35860.1 11Arabidopsis thaliana042777863 (0)S
AT3G52370.2 11Arabidopsis thaliana041480890 (0)_
Os03g57460.1 7Oryza sativa043771806 (6)S
Os07g06680.1 7Oryza sativa043369804 (4)S
Os03g57490.1 7Oryza sativa043064750 (0)S
Zm00001eb060130_P001 agpv5Zea mays044070810 (0)S
v1_GRMZM2G329181_P03 4a53Zea mays044070814 (4)S
GRMZM2G329181_P03 3.21Zea mays0440708110 (10)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Fasciclin(2)
TargetP: Secreted (Class 2 C0.015; M0.079; S0.683; _0.014)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 458 aa (-cTP 410)
Molecular Weight 50.41 kDA(-cTP )
PI 6.21(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
19334764(plasma membrane (cell culture))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help