PPDB

 The Plant Proteome Database

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AT5G06320.1   NDR1/HIN1-like 3
Lab Annot. NHL3 (NDR1/HIN1-like 3)
Mapman: 35.1 not assigned.no ontology
Curated Location plasma membrane

TAIR curated location: plasma membrane12913158
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G11650.1 11Arabidopsis thaliana2E-11123368780 (0)_
AT2G35460.1 11Arabidopsis thaliana1E-9923560740 (0)_
AT2G35980.1 11Arabidopsis thaliana8E-7023249650 (0)_
Os04g58850.1 7Oryza sativa9E-34208355128 (28)S
Os01g64450.1 7Oryza sativa2E-2220731510 (0)_
Os12g06260.1 7Oryza sativa4E-1921828460 (0)_
Zm00001eb434140_P001 agpv5Zea mays7E-3820834540 (0)S
GRMZM2G106792_P01 3.21Zea mays1E-3621734537 (7)C
v1_GRMZM2G106792_P01 4a53Zea mays1E-3621734536 (6)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: LEA_2(1) Porin_10(1)
TargetP: Cytoplasm (Class 1 C0.043; M0.071; S0.085; _0.939)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 231 aa (-cTP 211)
Molecular Weight 25.95 kDA(-cTP )
PI 9.35(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1716Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(PlasmaMembrane-LOPIT-callus)
17317660(Plasma Membrane proteome)
17151019(vacuole - suspension cell)
17644812(plasma membrane - suspension cells)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
19106119(plasma membrane detergent resistent microdomains (DRM))
19334764(plasma membrane (cell culture))
19888209(80S polysomal fraction)
21826108(SYP trans-Golgi-filtered)
21533090(plasmodesmata-crude)
20843791(DRM-enriched plasmamembrane)
21173025(root proteome)
22430844(Golgi-cell-culture)
21988472(vacuole (unfiltered data))
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

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