PPDB

PPDB	The Plant Proteome Database

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AT5G06160.1 splicing factor-like protein

Lab Annot.

splicing factor-related
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
Os03g50850.1 7 Oryza sativa 0 508 66 80 11 (11) _
Os03g50850.2 7 Oryza sativa 0 377 69 82 0 (0) _
Os01g48930.2 7 Oryza sativa 5E-12 96 43 55 0 (0) _
Zm00001eb156600_P003 agpv5 Zea mays 0 507 65 79 0 (0) _
GRMZM2G178227_P01 3.21 Zea mays 0 507 65 79 3 (3) _
v1_GRMZM2G178227_P01 4a53 Zea mays 0 507 65 79 18 (18) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ATP-synt_F6(1) Desulfoferrod_N(1) DUF3449(2) SF3A3(1) SF3a60_bindingd(1) Telomer
TargetP:	Cytoplasm (Class 3 C0.297; M0.156; S0.050; _0.743)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	504 aa (-cTP 494)
Molecular Weight	58.97 kDA(-cTP )
PI	5.20(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19245862(nuclear phosphoproteins (seedlings & cell culture))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data