PPDB

 The Plant Proteome Database

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AT5G05780.2   RP non-ATPase subunit 8A
Lab Annot. 26S proteasome regulatory subunit (RPN8a). AE3/ATHMOV34 (ASYMMETRIC LEAVES ENHANCER 3);
Mapman: 29.5.11.20.2* protein.degradation.ubiquitin.proteasome.26S
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G05780.1 11Arabidopsis thaliana03089999140 (59)_
AT3G11270.2 11Arabidopsis thaliana0302969822 (19)_
AT3G11270.1 11Arabidopsis thaliana0305959741 (24)_
Os04g56646.1 7Oryza sativa4E-99150909420 (20)C
Os05g01450.1 7Oryza sativa1E-24281284829 (29)C
Os08g39070.1 7Oryza sativa5E-2429625474 (4)C
Zm00001eb067440_P003 agpv5Zea mays028890950 (0)_
v1_GRMZM2G061745_P03 4a53Zea mays0288909549 (49)_
GRMZM2G061745_P03 3.21Zea mays02889095118 (45)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: JAB(1) MitMem_reg(1) Peptidase_M13_N(1)
TargetP: Cytoplasm (Class 3 C0.038; M0.069; S0.253; _0.681)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 305 aa (-cTP 272)
Molecular Weight 34.37 kDA(-cTP )
PI 6.06(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2043Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2044Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2045Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2047Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2048Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2049Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2050Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2051Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2052Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2053Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2054Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2217Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2246Detail       seedlings [A. thaliana] total tissue gfs9
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2268Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2297Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 21325567(root-proteome (wt & det3))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

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