PPDB

The Plant Proteome Database

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AT5G05680.1   nuclear pore complex protein-like protein

Lab Annot. Nucleoporin Nup88
Mapman: 29.3.1 protein.targeting.nucleus
Curated Location nucleus (Pubmed: 21189294 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os04g51900.1 7Oryza sativa072446640 (0)M
GRMZM2G156174_P01 3.21Zea mays081344610 (0)C
v1_GRMZM2G156174_P01 4a53Zea mays0813446113 (13)C
Zm00001eb430560_P002 agpv5Zea mays072546640 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ADIP(2) ATG16(2) Nup88(2)
TargetP: Cytoplasm (Class 4 C0.451; M0.099; S0.027; _0.767)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 3 TMs
TAT position:
Length 810 aa (-cTP 785)
Molecular Weight 89.73 kDA(-cTP )
PI 5.71(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

19114538(guard cells Arabidopsis leaf)
22060019(phosphoproteome - N-starved seedlings)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help