PPDB

The Plant Proteome Database

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AT5G05580.1   fatty acid desaturase 8

Lab Annot. Plastidial Linoleate Desaturase (FAD7/FAD8) (Lipid Gene Database: Beisson)
Mapman: 11.2.3 lipid metabolism.FA desaturation.omega 3 desaturase
Curated Location envelope-inner-integral (Pubmed: 23198870 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G05580.2 11Arabidopsis thaliana037899990 (0)C
AT3G11170.1 11Arabidopsis thaliana0446808526 (18)C
AT2G29980.1 11Arabidopsis thaliana035771830 (0)_
Os07g49310.1 7Oryza sativa037775844 (4)M
Os03g18070.1 7Oryza sativa0458657449 (49)M
Os12g01370.1 7Oryza sativa036370790 (0)_
Zm00001eb013340_P001 agpv5Zea mays039472820 (0)M
Zm00001eb013340_P002 agpv5Zea mays039468750 (0)M
GRMZM2G074401_P01 3.21Zea mays0321778893 (93)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF3474(1) FA_desaturase(1) Hum_adeno_E3A(2)
TargetP: Chloroplast (Class 2 C0.875; M0.095; S0.004; _0.133)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 3 TMs
Aramemnon: 3 TMs
TAT position:
Length 435 aa (-cTP 393)
Molecular Weight 50.14 kDA(-cTP 45.43)
PI 8.74(-cTP 7.42)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
19995723(chloroplast reference proteome)

Comparative Proteomics Data


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