PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G05550.1   sequence-specific DNA binding transcription factor

Lab Annot. sequence-specific DNA binding transcription factors
Mapman: 27.3.30 RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G05550.3 11Arabidopsis thaliana0245991000 (0)_
AT5G05550.2 11Arabidopsis thaliana02421001000 (0)_
AT3G11100.1 11Arabidopsis thaliana1E-10825072820 (0)_
Os01g48320.1 7Oryza sativa6E-359759790 (0)_
Os05g48690.2 7Oryza sativa3E-3310159710 (0)C
Os05g48690.1 7Oryza sativa3E-3310159710 (0)C
Zm00001eb157080_P002 agpv5Zea mays5E-5128938520 (0)_
Zm00001eb157080_P003 agpv5Zea mays5E-5128938520 (0)_
Zm00001eb157080_P001 agpv5Zea mays5E-5128938520 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF573(1) MADF_DNA_bdg(2) Myb_DNA-bind_3(1) Myb_DNA-bind_4(1) Myb_DNA-bind_6(1)
TargetP: Cytoplasm (Class 3 C0.222; M0.208; S0.062; _0.747)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 246 aa (-cTP 171)
Molecular Weight 28.19 kDA(-cTP )
PI 8.67(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help