PPDB

The Plant Proteome Database

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AT5G05540.1   small RNA degrading nuclease 2

Lab Annot.
Mapman: 28.99 DNA.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G05540.2 11Arabidopsis thaliana03511001000 (0)_
AT5G67240.2 11Arabidopsis thaliana2E-16245656730 (0)_
AT5G67240.3 11Arabidopsis thaliana5E-16145656730 (0)_
Os04g55700.1 7Oryza sativa9E-9441843600 (0)_
Os12g08740.2 7Oryza sativa4E-2317237590 (0)S
Os12g08740.1 7Oryza sativa2E-2217237590 (0)C
GRMZM2G082097_P01 3.21Zea mays2E-8945639570 (0)_
Zm00001eb068290_P001 agpv5Zea mays2E-8945640570 (0)_
Zm00001eb068290_P002 agpv5Zea mays5E-8945639570 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF2536(1) DUF5051(2) RNase_T(1)
TargetP: Cytoplasm (Class 4 C0.038; M0.044; S0.492; _0.730)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 466 aa (-cTP 461)
Molecular Weight 53.18 kDA(-cTP )
PI 8.67(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help