PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G05470.1   eukaryotic translation initiation factor 2 alpha subunit

Lab Annot. EIF2 ALPHA (eukaryotic translation initiation factor 2 alpha subunit); RNA binding
Mapman: 29.2.3 protein.synthesis.initiation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G40290.1 11Arabidopsis thaliana03448391138 (70)_
AT2G40290.3 11Arabidopsis thaliana5E-136225849486 (47)_
AT2G40290.2 11Arabidopsis thaliana5E-136225849486 (47)_
Os03g18510.1 7Oryza sativa3E-175337748626 (26)_
Os07g49220.1 7Oryza sativa5E-16833268830 (0)_
Zm00001eb396830_P002 agpv5Zea mays8E-17333774850 (0)_
GRMZM2G083262_P01 3.21Zea mays8E-173337748545 (44)_
v1_GRMZM2G083262_P01 4a53Zea mays8E-173337748544 (44)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: EIF_2_alpha(1) S1(2)
TargetP: Cytoplasm (Class 3 C0.189; M0.230; S0.022; _0.763)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 344 aa (-cTP 313)
Molecular Weight 38.80 kDA(-cTP )
PI 5.23(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2013Detail       leaf [A. thaliana] total leaf tissue wt
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2290Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help