PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G05340.1   Peroxidase superfamily protein

Lab Annot. peroxidase AtPrx52
Mapman: 26.12 misc.peroxidases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G58400.1 11Arabidopsis thaliana2E-13931763750 (0)S
AT5G58390.1 11Arabidopsis thaliana1E-133320597517 (5)S
AT1G14550.1 11Arabidopsis thaliana2E-12332155720 (0)S
Os11g02130.1 7Oryza sativa2E-14929767810 (0)S
Os12g02080.1 7Oryza sativa2E-14729767800 (0)M
Os06g35520.1 7Oryza sativa2E-14229665800 (0)_
Zm00001eb195210_P002 agpv5Zea mays6E-15029868800 (0)S
Zm00001eb195210_P001 agpv5Zea mays6E-15029868800 (0)S
AC197758.3_FGP004 3.21Zea mays6E-15029868803 (3)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF5592(1) peroxidase(1)
TargetP: Secreted (Class 1 C0.013; M0.017; S0.916; _0.051)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 324 aa (-cTP 278)
Molecular Weight 34.22 kDA(-cTP )
PI 8.65(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

14595688(Cell Wall proteome)
15815986(Silique)
18538804(apoplast)
19452453(14-3-3-interacting proteins)
19525416(leaf (wt and clpr4-1 mutant))
WallDB-E.Jamet(cell wall reference proteome)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21413152(Xylem-sap (BrassicaOleracea))
22430844(Golgi-cell-culture)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help