PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G05330.1   HMG-box (high mobility group) DNA-binding family protein
Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G05330.3 11Arabidopsis thaliana3E-15622096960 (0)C
AT5G05330.2 11Arabidopsis thaliana4E-1151571001000 (0)_
AT5G23420.1 11Arabidopsis thaliana2E-1016928451 (1)C
Os08g01100.1 7Oryza sativa4E-1114231490 (0)M
Zm00001eb198700_P004 agpv5Zea mays3E-1113833520 (0)M
v1_GRMZM2G125648_P01 4a53Zea mays3E-1113833521 (1)M
GRMZM2G125648_P01 3.21Zea mays3E-1113833523 (3)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HMG_box(2) HMG_box_2(1)
TargetP: Chloroplast (Class 4 C0.615; M0.336; S0.009; _0.160)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position: 48
Length 220 aa (-cTP 173) (-lTP 152)
Molecular Weight 25.93 kDA(-cTP 20.22)(-lTP 18.06)
PI 6.04(-cTP 4.61)(-lTP 4.581)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help