PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G05140.1   Transcription elongation factor (TFIIS) family protein

Lab Annot. transcription elongation factor-related
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G10820.1 11Arabidopsis thaliana6E-15543956660 (0)M
AT3G10820.2 11Arabidopsis thaliana4E-15143956660 (0)M
AT5G09850.2 11Arabidopsis thaliana4E-2241128440 (0)_
Os01g17990.1 7Oryza sativa1E-3342928460 (0)_
Os07g44820.1 7Oryza sativa6E-3146531450 (0)_
Os03g24950.1 7Oryza sativa1E-1423430460 (0)_
GRMZM2G087451_P01 3.21Zea mays1E-6037538540 (0)_
Zm00001eb349390_P002 agpv5Zea mays1E-6037538540 (0)_
v1_GRMZM2G087451_P01 4a53Zea mays1E-6037538540 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Med26(1)
TargetP: Mitochondria (Class 5 C0.108; M0.529; S0.027; _0.476)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 436 aa (-cTP 405)
Molecular Weight 49.13 kDA(-cTP )
PI 6.60(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
311Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-his6
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help