PPDB

PPDB	The Plant Proteome Database

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AT5G04810.1 pentatricopeptide (PPR) repeat-containing protein

Lab Annot.

pentatricopeptide repeat (PPR) protein - maize PPR4 orthologue
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

plastid nucleoid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G04810.2 11 Arabidopsis thaliana 0 781 100 100 0 (0) C
AT1G05670.3 11 Arabidopsis thaliana 1E-64 495 29 48 0 (0) M
AT1G05670.2 11 Arabidopsis thaliana 1E-64 495 29 48 0 (0) M
Os04g58780.1 7 Oryza sativa 0 799 58 77 0 (0) C
Os04g58780.2 7 Oryza sativa 0 554 62 82 0 (0) _
Os03g06910.1 7 Oryza sativa 2E-70 540 26 49 0 (0) M
Zm00001eb434090_P005 agpv5 Zea mays 0 782 59 77 0 (0) C
Zm00001eb434090_P003 agpv5 Zea mays 0 782 59 77 0 (0) C
Zm00001eb434090_P001 agpv5 Zea mays 0 782 59 77 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Alba(2) ATP13(6) BTAD(2) FtsK_gamma(3) MA3(1) MRP-S27(3) Mtf2(4) Nup35_RRM_2(1)
TargetP:	Chloroplast (Class 5 C0.322; M0.102; S0.002; _0.247)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	952 aa (-cTP 892)
Molecular Weight	106.74 kDA(-cTP 100.28)
PI	6.71(-cTP 6.57)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
542	Detail								leaf [A. thaliana]	stroma (FPLC) >500 kDa (HMB)	wild-type
543	Detail								leaf [A. thaliana]	stroma (FPLC) >600 kDa (HMA)	wild-type
871	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1175	Detail								leaf [A. thaliana]	co-IP RH3 stroma	wild-type
1176	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	wild-type
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1179	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1196	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1215	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	wild-type
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1635	Detail								leaf [A. thaliana]	Stroma stroma	clpt1-2
1639	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
1640	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
1936	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1949	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1983	Detail								leaf [A. thaliana]	plastid	wild-type
2311	Detail								leaf [A. thaliana]	PG plastoglobule
2313	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
20423899(chloroplast)

Comparative Proteomics Data