PPDB

PPDB	The Plant Proteome Database

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AT5G04560.1 HhH-GPD base excision DNA repair family protein

Lab Annot.

HhH-GPD base excision DNA repair protein
Mapman: 27.3.34 RNA.regulation of transcription.Orphan family

Curated Location

TAIR curated location: polar nucleus12150995

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G04560.3 11 Arabidopsis thaliana 0 1729 100 100 0 (0) _
AT5G04560.2 11 Arabidopsis thaliana 0 1729 100 100 1 (1) _
AT2G36490.1 11 Arabidopsis thaliana 0 557 65 79 2 (2) _
Os01g11900.1 7 Oryza sativa 0 550 67 81 0 (0) _
Os05g37410.1 7 Oryza sativa 0 548 62 76 0 (0) _
Os05g37350.1 7 Oryza sativa 0 547 60 73 0 (0) _
Zm00001eb289030_P003 agpv5 Zea mays 0 538 63 75 0 (0) C
GRMZM2G131756_P01 3.21 Zea mays 0 538 63 75 0 (0) _
v1_GRMZM2G131756_P01 4a53 Zea mays 0 538 63 75 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	HhH-GPD(2) Perm-CXXC(1) RRM_DME(1)
TargetP:	Cytoplasm (Class 4 C0.411; M0.042; S0.049; _0.761)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1729 aa (-cTP 1678)
Molecular Weight	192.90 kDA(-cTP )
PI	8.36(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data