PPDB

PPDB	The Plant Proteome Database

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AT5G04310.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

TAIR curated location: anchored to membrane12068095,12805588

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G04310.2 11 Arabidopsis thaliana 0 518 100 100 0 (0) M
AT5G04310.3 11 Arabidopsis thaliana 0 438 100 100 0 (0) M
AT3G54920.1 11 Arabidopsis thaliana 0 410 67 79 0 (0) S
Os10g31910.1 7 Oryza sativa 2E-179 403 60 74 0 (0) S
Os04g05050.1 7 Oryza sativa 4E-174 398 60 74 0 (0) S
Os04g05050.2 7 Oryza sativa 5E-172 376 61 76 0 (0) _
v1_GRMZM2G472060_P01 4a53 Zea mays 0 400 62 75 0 (0) S
GRMZM2G472060_P01 3.21 Zea mays 0 400 62 75 0 (0) S
Zm00001eb046690_P001 agpv5 Zea mays 0 400 62 75 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) NosD(1) Pectate_lyase_4(1)
TargetP:	Mitochondria (Class 5 C0.138; M0.275; S0.103; _0.038)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	518 aa (-cTP 461)
Molecular Weight	56.04 kDA(-cTP )
PI	6.72(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data