PPDB

PPDB	The Plant Proteome Database

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AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein

Lab Annot.

glycine-rich RNA-binding protein
Mapman: 27.4 RNA.RNA binding

Curated Location

nucleus (Pubmed: 15496452 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G04280.2 11 Arabidopsis thaliana 0 272 100 100 0 (0) M
AT5G04280.5 11 Arabidopsis thaliana 0 272 100 100 0 (0) M
AT5G04280.4 11 Arabidopsis thaliana 0 272 100 100 0 (0) M
Os03g47800.1 7 Oryza sativa 8E-52 328 42 53 11 (11) _
Os07g08960.1 7 Oryza sativa 4E-48 324 44 54 26 (26) _
Os03g61990.3 7 Oryza sativa 2E-24 149 38 60 23 (23) _
GRMZM2G083783_P01 3.21 Zea mays 3E-58 255 49 60 9 (9) _
Zm00001eb053020_P002 agpv5 Zea mays 3E-58 255 49 60 0 (0) _
v1_GRMZM2G083783_P01 4a53 Zea mays 3E-58 255 49 60 19 (19) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Pinin_SDK_N(2) RRM_1(1) RRM_7(1) zf-CCHC(1) zf-CCHC_2(1) zf-CCHC_3(1) zf-CCHC_4(
TargetP:	Cytoplasm (Class 2 C0.122; M0.180; S0.046; _0.786)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	310 aa (-cTP 308)
Molecular Weight	33.49 kDA(-cTP )
PI	9.13(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data