PPDB

 The Plant Proteome Database

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AT5G04260.1   WCRKC thioredoxin 2
Lab Annot. thioredoxin protein, WCRKC2
Mapman: 21.1 redox.thioredoxin
Curated Location plastid stroma (Pubmed: 23198870 19259774 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G06690.1 11Arabidopsis thaliana4E-43114557324 (10)C
AT5G06690.4 11Arabidopsis thaliana7E-258052710 (0)C
AT5G06690.2 11Arabidopsis thaliana7E-2580527122 (11)C
Os02g57380.1 7Oryza sativa8E-5311764810 (0)C
Os02g53400.1 7Oryza sativa3E-3811355710 (0)M
Os02g57380.2 7Oryza sativa3E-195961760 (0)C
GRMZM2G003028_P02 3.21Zea mays6E-5011864813 (3)C
v1_GRMZM2G003028_P01 4a53Zea mays4E-408571870 (0)S
Zm00001eb193260_P002 agpv5Zea mays7E-3911456710 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Thioredoxin(1) Thioredoxin_2(1)
TargetP: Chloroplast (Class 2 C0.858; M0.136; S0.035; _0.086)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 192 aa (-cTP 137) (-lTP 52)
Molecular Weight 21.84 kDA(-cTP 15.53)(-lTP 5.90)
PI 8.32(-cTP 5.55)(-lTP 7.929)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
873Detail       leaf [A. thaliana] chloroplast stromawild-type
1458Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2287Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 16358359(cell suspension (Gamborg))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help