PPDB

 The Plant Proteome Database

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AT5G04170.1   Calcium-binding EF-hand family protein
Lab Annot. Calcium-binding EF-hand protein
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G10300.3 11Arabidopsis thaliana6E-15937668737 (6)_
AT3G10300.6 11Arabidopsis thaliana2E-13434267710 (0)_
AT3G10300.4 11Arabidopsis thaliana2E-12833666717 (6)_
Os11g04480.1 7Oryza sativa2E-122245738121 (21)_
Os12g04240.1 7Oryza sativa8E-122238758121 (21)_
Os12g04240.2 7Oryza sativa1E-91196727917 (17)_
Zm00001eb176050_P001 agpv5Zea mays2E-6120449680 (0)_
Zm00001eb176050_P002 agpv5Zea mays2E-6120449680 (0)_
GRMZM2G069922_P03 3.21Zea mays2E-6120449680 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: EF-hand_1(3) EF-hand_5(2) EF-hand_6(2) EF-hand_7(2) EF-hand_8(3) LEM(1)
TargetP: Cytoplasm (Class 4 C0.311; M0.202; S0.008; _0.618)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 354 aa (-cTP 308)
Molecular Weight 37.11 kDA(-cTP )
PI 6.42(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 21533090(plasmodesmata-crude)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help