PPDB

PPDB	The Plant Proteome Database

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AT5G04130.1 DNA GYRASE B2

Lab Annot.

DNA gyrase B2 (dual targeted plastids and mitochondria)
Mapman: 28.1 DNA.synthesis/chromatin structure

Curated Location

mitochondria (Pubmed: 23198870 15136745 )
plastid nucleoid (Pubmed: 23198870 15136745 )

TAIR curated location: mitochondrion14671022

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G10270.2 11 Arabidopsis thaliana 0 737 86 92 0 (0) M
AT3G10270.1 11 Arabidopsis thaliana 0 737 86 92 33 (28) M
AT5G04130.2 11 Arabidopsis thaliana 0 516 99 99 2 (1) M
Os01g16290.1 7 Oryza sativa 0 655 78 89 18 (18) C
Os01g16290.2 7 Oryza sativa 0 536 79 90 18 (18) C
Os02g47150.1 7 Oryza sativa 1E-30 585 26 44 2 (2) _
Zm00001eb128720_P003 agpv5 Zea mays 0 701 74 85 0 (0) C
v1_GRMZM2G111014_P01 4a53 Zea mays 0 701 74 85 52 (52) C
Zm00001eb128720_P001 agpv5 Zea mays 0 701 74 85 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DNA_gyraseB(1) DNA_gyraseB_C(1) HATPase_c(1) HATPase_c_3(1) RNA_pol_Rpb6(2) Topr
TargetP:	Mitochondria (Class 3 C0.362; M0.801; S0.001; _0.002)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	732 aa (-cTP 652)
Molecular Weight	81.05 kDA(-cTP )
PI	8.84(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
542	Detail								leaf [A. thaliana]	stroma (FPLC) >500 kDa (HMB)	wild-type
640	Detail								leaf [A. thaliana]	plastid nucleoid	wild-type
876	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2290	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
21311031(mitochondria)
21173025(root proteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data