PPDB

The Plant Proteome Database

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AT5G03900.1   Iron-sulfur cluster biosynthesis family protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G03900.2 11Arabidopsis thaliana04299910030 (22)C
Os02g33010.1 7Oryza sativa7E-14936563782 (2)C
v1_GRMZM2G145958_P01 4a53Zea mays1E-154360627915 (15)C
Zm00001eb242770_P003 agpv5Zea mays1E-15436062790 (0)C
GRMZM2G145958_P01 3.21Zea mays1E-154360627932 (32)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: TraD(1)
TargetP: Chloroplast (Class 4 C0.706; M0.404; S0.009; _0.023)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 2 TMs
Aramemnon: 3 TMs
TAT position: 101
Length 429 aa (-cTP 367) (-lTP 302)
Molecular Weight 48.17 kDA(-cTP 41.06)(-lTP 34.42)
PI 8.88(-cTP 5.24)(-lTP 5.167)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help