PPDB

The Plant Proteome Database

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AT5G03860.1   malate synthase

Lab Annot. malate synthase
Mapman: 6.2 gluconeogenese/ glyoxylate cycle.malate synthase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G03860.2 11Arabidopsis thaliana056210010030 (28)_
Os04g40990.1 7Oryza sativa055972830 (0)_
Os04g40990.2 7Oryza sativa042074830 (0)M
Zm00001eb079170_P002 agpv5Zea mays054376860 (0)_
v1_GRMZM2G102183_P03 4a53Zea mays054376860 (0)_
GRMZM2G102183_P03 3.21Zea mays054376860 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: HpcH_HpaI(3) Malate_synthase(1)
TargetP: Cytoplasm (Class 2 C0.082; M0.159; S0.045; _0.902)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 562 aa (-cTP 551)
Molecular Weight 63.89 kDA(-cTP )
PI 8.02(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2274Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type
2301Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
17828791(total leaf)
18599647(seed proteome)
18436743(specific to seeds)
19334764(plasma membrane (cell culture))
21607647(SUMOylated proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help