PPDB

 The Plant Proteome Database

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AT5G03850.1   Nucleic acid-binding%2C OB-fold-like protein
Lab Annot. 40S ribosomal protein S28 (RPS28B)
Mapman: 29.2.1.2.1.28 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S28
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G10090.1 11Arabidopsis thaliana2E-406410010046 (29)_
AT5G64140.1 11Arabidopsis thaliana2E-396496100156 (121)_
Os10g27174.1 7Oryza sativa1E-3265879238 (38)_
v1_GRMZM2G455828_P03 4a53Zea mays1E-3265879298 (96)_
v1_GRMZM2G455828_P01 4a53Zea mays1E-3265879298 (96)_
v1_GRMZM2G455828_P04 4a53Zea mays1E-3265879298 (96)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Ribosomal_S28e(1)
TargetP: Cytoplasm (Class 3 C0.116; M0.240; S0.133; _0.659)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 64 aa (-cTP 52)
Molecular Weight 7.37 kDA(-cTP )
PI 10.83(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2043Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2044Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2045Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2046Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2047Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2048Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2049Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2050Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2051Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2052Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2053Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2054Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2192Detail        [A. thaliana] total soluble P3-trap-strepII 16
2248Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 15060130(Plasma Membrane proteome)
16287169(Cell Wall proteome)
17934214(cytosolic ribosome)

Comparative Proteomics Data

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