PPDB

PPDB	The Plant Proteome Database

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AT5G03740.1 histone deacetylase 2C

Lab Annot.

histone deacetylase 2C (HD2C)
Mapman: 27.3.55 RNA.regulation of transcription.HDA

Curated Location

TAIR curated location: nucleolus16553900

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G44750.2 11 Arabidopsis thaliana 1E-29 100 50 69 4 (4) _
AT3G44750.1 11 Arabidopsis thaliana 1E-29 100 50 69 10 (10) _
AT5G22650.1 11 Arabidopsis thaliana 5E-24 281 36 50 23 (20) _
Os05g51830.1 7 Oryza sativa 2E-49 303 43 58 13 (13) _
Os01g68160.1 7 Oryza sativa 6E-29 329 31 46 0 (0) _
Os01g68160.2 7 Oryza sativa 5E-23 321 29 45 0 (0) _
GRMZM5G898314_P02 3.21 Zea mays 3E-29 305 36 51 2 (2) _
Zm00001eb365080_P001 agpv5 Zea mays 3E-29 305 36 51 0 (0) _
GRMZM5G898314_P01 3.21 Zea mays 2E-25 305 36 50 2 (2) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BUD22(1) CDC45(1) Lin-8(1) Merozoite_SPAM(1) Mur_ligase(1) Nop14(1) NPL(1) SAPS(
TargetP:	Cytoplasm (Class 2 C0.109; M0.136; S0.107; _0.803)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	294 aa (-cTP 199)
Molecular Weight	31.83 kDA(-cTP )
PI	4.77(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1547	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1548	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1550	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1551	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1552	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1569	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1572	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
1581	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1582	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
2319	Detail								leaf [A. thaliana]	PG plastoglobule
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19714877(interactomes 14-3-3 complexes (cell culture))
20706207(cell cycle interactome (cell culture))
20166762(guard cells (Arabidopsis))
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data