PPDB

 The Plant Proteome Database

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AT5G03100.1   F-box/RNI-like superfamily protein
Lab Annot. F-box protein
Mapman: 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G03100.2 11Arabidopsis thaliana03071001000 (0)_
AT3G28410.1 11Arabidopsis thaliana6E-8930949651 (0)M
AT5G02700.1 11Arabidopsis thaliana6E-8730948650 (0)M
Os07g36520.1 7Oryza sativa3E-1423626460 (0)_
Os06g36220.1 7Oryza sativa3E-1226326390 (0)_
Os11g10180.1 7Oryza sativa8E-1214328490 (0)_
Zm00001eb127920_P001 agpv5Zea mays1E-1123526420 (0)_
v1_GRMZM2G132913_P01 4a53Zea mays1E-1123526420 (0)_
GRMZM2G132913_P01 3.21Zea mays1E-1123526420 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: F-box(1) F-box-like(2) LRR_2(2) LRR_4(2)
TargetP: Cytoplasm (Class 3 C0.188; M0.064; S0.044; _0.780)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 307 aa (-cTP 253)
Molecular Weight 34.84 kDA(-cTP )
PI 9.16(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
667Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2-1)
671Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 3-1)
682Detail       leaf [A. thaliana] chloroplast plastoglobulek3 (rep. 2-1)
1122Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1260Detail       leaf [A. thaliana] co-IP SHOOT1 (rep. 1) thylakoid membranewild-type
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1917Detail       leaf [A. thaliana] total leaf tissue wild-type
1919Detail       leaf [A. thaliana] total leaf tissue wild-type
1922Detail       leaf [A. thaliana] total leaf tissue k1k3 double
1925Detail       leaf [A. thaliana] total leaf tissue k1xk3 mutant (TiO2)
1927Detail       leaf [A. thaliana] total leaf tissue k1xk3 mutant (TiO2)
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2246Detail       seedlings [A. thaliana] total tissue gfs9
2269Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2274Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

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