PPDB

 The Plant Proteome Database

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AT5G02830.1   Tetratricopeptide repeat (TPR)-like superfamily protein
Lab Annot. Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location plastid nucleoid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G09900.1 11Arabidopsis thaliana3E-3045524442 (2)_
AT5G42310.1 11Arabidopsis thaliana8E-29439244593 (83)M
AT2G18940.1 11Arabidopsis thaliana2E-2843326445 (4)C
Os03g17634.1 7Oryza sativa080743600 (0)C
Os04g41140.1 7Oryza sativa2E-3042327400 (0)M
Os02g35750.1 7Oryza sativa3E-3042826450 (0)C
Zm00001eb397200_P003 agpv5Zea mays078743620 (0)C
GRMZM2G092123_P01 3.21Zea mays2E-137504476214 (14)_
GRMZM2G092123_P02 3.21Zea mays2E-137504476214 (14)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Mtf2(3) PPR(10) PPR_1(9) PPR_2(11) PPR_3(8) PPR_long(4) RPM2(2)
TargetP: Chloroplast (Class 2 C0.852; M0.155; S0.001; _0.079)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 852 aa (-cTP 827) (-lTP 744)
Molecular Weight 95.22 kDA(-cTP 92.27)(-lTP 83.35)
PI 7.69(-cTP 7.22)(-lTP 7.734)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help