PPDB

 The Plant Proteome Database

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AT5G02530.2   RNA-binding (RRM/RBD/RNP motifs) family protein
Lab Annot. RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G02530.1 11Arabidopsis thaliana0292999926 (20)_
AT5G59950.1 11Arabidopsis thaliana3E-63289505816 (13)C
AT5G59950.5 11Arabidopsis thaliana6E-63289505715 (12)C
Os03g17010.1 7Oryza sativa5E-56192576823 (23)_
Os03g17010.3 7Oryza sativa2E-4811868810 (0)_
Os03g17010.2 7Oryza sativa2E-4811868810 (0)_
Zm00001eb012600_P001 agpv5Zea mays7E-6429347560 (0)_
v1_GRMZM2G157329_P01 4a53Zea mays7E-64293475637 (37)_
v1_GRMZM2G157329_P02 4a53Zea mays7E-64293475637 (37)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FoP_duplication(2) RRM_1(1)
TargetP: Cytoplasm (Class 5 C0.644; M0.030; S0.016; _0.771)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 290 aa (-cTP 204)
Molecular Weight 30.57 kDA(-cTP )
PI 9.88(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1427Detail        [A. thaliana] total leaf tissue 1.11 wild-type
1548Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1549Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1552Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2244Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help