PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G02530.2 11 Arabidopsis thaliana 0 292 99 99 20 (14) _
AT5G59950.1 11 Arabidopsis thaliana 5E-63 291 50 57 16 (13) C
AT5G59950.3 11 Arabidopsis thaliana 1E-62 291 50 57 14 (11) _
Os03g17010.1 7 Oryza sativa 4E-56 192 57 68 23 (23) _
Os03g17010.3 7 Oryza sativa 2E-48 118 68 81 0 (0) _
Os03g17010.2 7 Oryza sativa 2E-48 118 68 81 0 (0) _
Zm00001eb012600_P001 agpv5 Zea mays 1E-64 295 47 57 0 (0) _
v1_GRMZM2G157329_P01 4a53 Zea mays 1E-64 295 47 57 37 (37) _
v1_GRMZM2G157329_P02 4a53 Zea mays 1E-64 295 47 57 37 (37) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	FoP_duplication(2) RRM_1(1)
TargetP:	Cytoplasm (Class 5 C0.644; M0.030; S0.016; _0.771)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	292 aa (-cTP 206)
Molecular Weight	30.78 kDA(-cTP )
PI	9.98(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
325	Detail								BY2 cell suspension [Tobacco]	cell wall enriched	wild-type
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1427	Detail								[A. thaliana]	total leaf tissue 1.11	wild-type
1548	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1549	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1552	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2244	Detail								seedlings [A. thaliana]	total tissue	gfs9
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2257	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2259	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19714877(interactomes 14-3-3 complexes (cell culture))
20706207(cell cycle interactome (cell culture))
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data