PPDB

The Plant Proteome Database

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AT5G02260.1   expansin A9

Lab Annot. alpha-expansin (AtEXPA9)
Mapman: 10.7 cell wall.modification
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G37640.1 11Arabidopsis thaliana1E-15225879871 (1)S
AT2G39700.1 11Arabidopsis thaliana9E-15025876861 (1)S
AT3G55500.1 11Arabidopsis thaliana1E-14325474860 (0)S
Os03g60720.1 7Oryza sativa1E-14024276884 (4)S
Os05g39990.1 7Oryza sativa2E-12022772810 (0)M
Os01g60770.1 7Oryza sativa2E-11922771810 (0)S
v1_GRMZM2G445169_P01 4a53Zea mays3E-13824375870 (0)S
Zm00001eb211650_P001 agpv5Zea mays3E-13824375870 (0)S
GRMZM2G445169_P01 3.21Zea mays3E-13824375870 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DPBB_1(1) Expansin_C(1)
TargetP: Secreted (Class 1 C0.013; M0.028; S0.949; _0.137)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 258 aa (-cTP 249)
Molecular Weight 27.75 kDA(-cTP )
PI 9.40(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
18436743(specific to roots)
18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)
21173025(root proteome)
21413152(Xylem-sap (BrassicaOleracea))
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help