PPDB

PPDB	The Plant Proteome Database

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AT5G01980.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G08139.1 11 Arabidopsis thaliana 6E-29 108 50 68 0 (0) _
AT3G19950.1 11 Arabidopsis thaliana 8E-28 109 44 66 0 (0) _
AT3G19950.2 11 Arabidopsis thaliana 1E-27 109 44 66 0 (0) _
Os12g02620.1 7 Oryza sativa 1E-74 498 34 50 0 (0) _
Os11g02670.1 7 Oryza sativa 2E-70 488 34 50 0 (0) _
Os10g34590.1 7 Oryza sativa 5E-34 187 39 55 5 (5) M
v1_GRMZM2G466823_P01 4a53 Zea mays 8E-60 508 33 47 0 (0) _
Zm00001eb195510_P001 agpv5 Zea mays 8E-60 508 33 47 0 (0) _
GRMZM5G886096_P01 3.21 Zea mays 8E-60 508 33 47 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Prok-RING_4(2) Rad50_zn_hook(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3HC4
TargetP:	Cytoplasm (Class 5 C0.547; M0.059; S0.026; _0.644)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	493 aa (-cTP 408)
Molecular Weight	55.54 kDA(-cTP )
PI	4.99(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data