PPDB

PPDB	The Plant Proteome Database

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AT5G01960.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G65040.1 11 Arabidopsis thaliana 8E-12 128 34 52 0 (0) S
AT1G65040.5 11 Arabidopsis thaliana 1E-11 128 34 52 0 (0) _
AT1G65040.6 11 Arabidopsis thaliana 1E-11 128 34 52 0 (0) _
Os01g07390.1 7 Oryza sativa 0 412 67 77 0 (0) M
Os05g25180.1 7 Oryza sativa 0 382 70 79 0 (0) _
Os06g19680.2 7 Oryza sativa 3E-10 58 44 62 0 (0) S
Zm00001eb123170_P003 agpv5 Zea mays 0 411 65 75 0 (0) C
GRMZM2G061980_P01 3.21 Zea mays 0 424 66 76 0 (0) _
Zm00001eb285000_P001 agpv5 Zea mays 0 424 66 76 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DZR_2(1) Prok-RING_4(1) TctB(1) zf-ANAPC11(1) zf-C3H2C3(1) zf-C3HC4(1) zf-C3HC4_
TargetP:	Chloroplast (Class 3 C0.808; M0.263; S0.007; _0.106)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	4 TMs
Aramemnon:	4 TMs
TAT position:
Length	426 aa (-cTP 380)
Molecular Weight	47.79 kDA(-cTP 42.82)
PI	8.05(-cTP 7.39)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data