PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G01730.1   SCAR family protein 4
Lab Annot. WAVE3
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G01730.4 11Arabidopsis thaliana011701001000 (0)_
AT5G01730.9 11Arabidopsis thaliana0115599990 (0)_
AT5G01730.11 11Arabidopsis thaliana011161001000 (0)_
Os03g60240.1 7Oryza sativa1E-6717962810 (0)_
Os03g60240.2 7Oryza sativa2E-6717962810 (0)_
Os03g18710.1 7Oryza sativa4E-5525042660 (0)_
Zm00001eb062310_P002 agpv5Zea mays2E-6719161790 (0)_
Zm00001eb062310_P001 agpv5Zea mays2E-6719161790 (0)_
v1_GRMZM2G450920_P01 4a53Zea mays7E-6321654690 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM:
TargetP: Cytoplasm (Class 2 C0.039; M0.214; S0.073; _0.843)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1170 aa (-cTP 1150)
Molecular Weight 128.62 kDA(-cTP )
PI 4.56(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
180_181Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
221Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
224Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
226Detail       leaf [A. thaliana] chloroplast plastoglobuleclpr2-1
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1469Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 3)
1678Detail       Rosettes [A. thaliana]  
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 16461379(plastoglubular)
18431481(chloroplast)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help